>>> Building on exopi-5 under math/py-netcdf4 BDEPENDS = [lang/pythran;lang/python/3;archivers/snappy;devel/py-wheel;math/py-numpy;devel/py-installer;math/netcdf;devel/py-setuptools;devel/py-build;lang/cython;math/py-oldest-supported-numpy;archivers/blosc;devel/py-setuptools_scm;archivers/libzip;math/hdf5] DIST = [math/py-netcdf4:netcdf4-1.7.2.tar.gz] FULLPKGNAME = py3-netcdf4-1.7.2p2 RDEPENDS = [math/py-cftime;lang/python/3;devel/py-certifi;lang/cython;math/hdf5;math/py-numpy] (Junk lock obtained for exopi-5 at 1764688532.88) >>> Running depends in math/py-netcdf4 at 1764688532.92 last junk was in math/py-oldest-supported-numpy /usr/sbin/pkg_add -aI -Drepair blosc-1.21.6p0 hdf5-1.14.6p1 libzip-1.8.0p0 netcdf-4.9.3p0 py3-build-1.3.0 py3-cython-3.1.6v0 py3-installer-0.7.0p2 py3-numpy-2.2.6p2 py3-oldest-supported-numpy-2022.8.16p3 py3-setuptools-79.0.1v0 py3-setuptools_scm-9.0.2 py3-wheel-0.46.1 python-3.13.9 pythran-0.15.0p6 snappy-1.1.10p2 was: /usr/sbin/pkg_add -aI -Drepair blosc-1.21.6p0 hdf5-1.14.6p1 libzip-1.8.0p0 netcdf-4.9.3p0 py3-build-1.3.0 py3-cython-3.1.6v0 py3-installer-0.7.0p2 py3-numpy-2.2.6p2 py3-oldest-supported-numpy-2022.8.16p3 py3-setuptools-79.0.1v0 py3-setuptools_scm-9.0.2 py3-wheel-0.46.1 python-3.13.9 pythran-0.15.0p6 snappy-1.1.10p2 /usr/sbin/pkg_add -aI -Drepair blosc-1.21.6p0 hdf5-1.14.6p1 libzip-1.8.0p0 netcdf-4.9.3p0 py3-build-1.3.0 py3-cython-3.1.6v0 py3-installer-0.7.0p2 py3-numpy-2.2.6p2 py3-oldest-supported-numpy-2022.8.16p3 py3-setuptools-79.0.1v0 py3-setuptools_scm-9.0.2 py3-wheel-0.46.1 python-3.13.9 pythran-0.15.0p6 snappy-1.1.10p2 >>> Running show-prepare-results in math/py-netcdf4 at 1764688541.57 ===> math/py-netcdf4 ===> Building from scratch py3-netcdf4-1.7.2p2 ===> py3-netcdf4-1.7.2p2 depends on: blosc-* -> blosc-1.21.6p0 ===> py3-netcdf4-1.7.2p2 depends on: libzip-* -> libzip-1.8.0p0 ===> py3-netcdf4-1.7.2p2 depends on: snappy-* -> snappy-1.1.10p2 ===> py3-netcdf4-1.7.2p2 depends on: py3-cython-* -> py3-cython-3.1.6v0 ===> py3-netcdf4-1.7.2p2 depends on: hdf5-* -> hdf5-1.14.6p1 ===> py3-netcdf4-1.7.2p2 depends on: netcdf-* -> netcdf-4.9.3p0 ===> py3-netcdf4-1.7.2p2 depends on: py3-oldest-supported-numpy-* -> py3-oldest-supported-numpy-2022.8.16p3 ===> py3-netcdf4-1.7.2p2 depends on: py3-numpy-* -> py3-numpy-2.2.6p2 ===> py3-netcdf4-1.7.2p2 depends on: python->=3.13,<3.14 -> python-3.13.9 ===> py3-netcdf4-1.7.2p2 depends on: py3-build-* -> py3-build-1.3.0 ===> py3-netcdf4-1.7.2p2 depends on: py3-installer-* -> py3-installer-0.7.0p2 ===> py3-netcdf4-1.7.2p2 depends on: py3-setuptools->=79v0 -> py3-setuptools-79.0.1v0 ===> py3-netcdf4-1.7.2p2 depends on: py3-wheel-* -> py3-wheel-0.46.1 ===> py3-netcdf4-1.7.2p2 depends on: py3-setuptools_scm-* -> py3-setuptools_scm-9.0.2 ===> py3-netcdf4-1.7.2p2 depends on: pythran-* -> pythran-0.15.0p6 ===> Verifying specs: netcdf ===> found netcdf.11.0 blosc-1.21.6p0 hdf5-1.14.6p1 libzip-1.8.0p0 netcdf-4.9.3p0 py3-build-1.3.0 py3-cython-3.1.6v0 py3-installer-0.7.0p2 py3-numpy-2.2.6p2 py3-oldest-supported-numpy-2022.8.16p3 py3-setuptools-79.0.1v0 py3-setuptools_scm-9.0.2 py3-wheel-0.46.1 python-3.13.9 pythran-0.15.0p6 snappy-1.1.10p2 (Junk lock released for exopi-5 at 1764688544.42) distfiles size=835064 >>> Running extract in math/py-netcdf4 at 1764688544.45 ===> math/py-netcdf4 ===> Checking files for py3-netcdf4-1.7.2p2 `/exopi-cvs/ports/distfiles/netcdf4-1.7.2.tar.gz' is up to date. >> (SHA256) all files: OK ===> Extracting for py3-netcdf4-1.7.2p2 >>> Running build in math/py-netcdf4 at 1764688544.84 ===> math/py-netcdf4 ===> Patching for py3-netcdf4-1.7.2p2 ===> Applying OpenBSD patch patch-pyproject_toml Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Index: pyproject.toml |--- pyproject.toml.orig |+++ pyproject.toml -------------------------- Patching file pyproject.toml using Plan A... Hunk #1 succeeded at 2. done ===> Compiler link: clang -> /usr/bin/clang ===> Compiler link: clang++ -> /usr/bin/clang++ ===> Compiler link: cc -> /usr/bin/cc ===> Compiler link: c++ -> /usr/bin/c++ ===> Generating configure for py3-netcdf4-1.7.2p2 ===> Configuring for py3-netcdf4-1.7.2p2 ===> Building for py3-netcdf4-1.7.2p2 * Getting build dependencies for wheel... -L/usr/local/lib -lnetcdf Package hdf5 was not found in the pkg-config search path. Perhaps you should add the directory containing `hdf5.pc' to the PKG_CONFIG_PATH environment variable Package 'hdf5' not found /usr/local/lib/python3.13/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/local/lib/python3.13/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/local/lib/python3.13/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() reading from setup.cfg... using nc-config... checking /usr/local/include... HDF5 library version: 1.14.6 headers found in /usr/local/include using netcdf library version b'4.9.3' using Cython to compile netCDF4.pyx... netcdf lib does not have parallel functions NETCDF_PLUGIN_DIR not set, no netcdf compression plugins installed running egg_info writing src/netCDF4.egg-info/PKG-INFO writing dependency_links to src/netCDF4.egg-info/dependency_links.txt writing entry points to src/netCDF4.egg-info/entry_points.txt writing requirements to src/netCDF4.egg-info/requires.txt writing top-level names to src/netCDF4.egg-info/top_level.txt reading manifest file 'src/netCDF4.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'examples/data' warning: no previously-included files found matching 'src/netCDF4/_netCDF4.c' adding license file 'LICENSE' writing manifest file 'src/netCDF4.egg-info/SOURCES.txt' * Building wheel... -L/usr/local/lib -lnetcdf Package hdf5 was not found in the pkg-config search path. Perhaps you should add the directory containing `hdf5.pc' to the PKG_CONFIG_PATH environment variable Package 'hdf5' not found /usr/local/lib/python3.13/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/local/lib/python3.13/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/local/lib/python3.13/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() reading from setup.cfg... using nc-config... checking /usr/local/include... HDF5 library version: 1.14.6 headers found in /usr/local/include using netcdf library version b'4.9.3' using Cython to compile netCDF4.pyx... netcdf lib does not have parallel functions NETCDF_PLUGIN_DIR not set, no netcdf compression plugins installed running bdist_wheel running build running build_py creating build/lib.openbsd-7.8-amd64-cpython-313/netCDF4 copying src/netCDF4/__init__.py -> build/lib.openbsd-7.8-amd64-cpython-313/netCDF4 copying src/netCDF4/utils.py -> build/lib.openbsd-7.8-amd64-cpython-313/netCDF4 running egg_info writing src/netCDF4.egg-info/PKG-INFO writing dependency_links to src/netCDF4.egg-info/dependency_links.txt writing entry points to src/netCDF4.egg-info/entry_points.txt writing requirements to src/netCDF4.egg-info/requires.txt writing top-level names to src/netCDF4.egg-info/top_level.txt reading manifest file 'src/netCDF4.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'examples/data' warning: no previously-included files found matching 'src/netCDF4/_netCDF4.c' adding license file 'LICENSE' writing manifest file 'src/netCDF4.egg-info/SOURCES.txt' copying src/netCDF4/__init__.pyi -> build/lib.openbsd-7.8-amd64-cpython-313/netCDF4 copying src/netCDF4/_netCDF4.pyi -> build/lib.openbsd-7.8-amd64-cpython-313/netCDF4 copying src/netCDF4/_netCDF4.pyx -> build/lib.openbsd-7.8-amd64-cpython-313/netCDF4 copying src/netCDF4/py.typed -> build/lib.openbsd-7.8-amd64-cpython-313/netCDF4 creating build/lib.openbsd-7.8-amd64-cpython-313/netCDF4/plugins copying src/netCDF4/plugins/empty.txt -> build/lib.openbsd-7.8-amd64-cpython-313/netCDF4/plugins running build_ext Compiling src/netCDF4/_netCDF4.pyx because it changed. [1/1] Cythonizing src/netCDF4/_netCDF4.pyx building 'netCDF4._netCDF4' extension creating build/temp.openbsd-7.8-amd64-cpython-313/external/nc_complex/src creating build/temp.openbsd-7.8-amd64-cpython-313/src/netCDF4 cc -O2 -pipe -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DNC_COMPLEX_NO_EXPORT=1 -I/usr/local/include -I/usr/local/include -I/usr/local/lib/python3.13/site-packages/numpy/_core/include -Iinclude -Iexternal/nc_complex/include -Iexternal/nc_complex/include/generated_fallbacks -I/usr/local/include/python3.13 -c external/nc_complex/src/nc_complex.c -o build/temp.openbsd-7.8-amd64-cpython-313/external/nc_complex/src/nc_complex.o cc -O2 -pipe -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DNC_COMPLEX_NO_EXPORT=1 -I/usr/local/include -I/usr/local/include -I/usr/local/lib/python3.13/site-packages/numpy/_core/include -Iinclude -Iexternal/nc_complex/include -Iexternal/nc_complex/include/generated_fallbacks -I/usr/local/include/python3.13 -c src/netCDF4/_netCDF4.c -o build/temp.openbsd-7.8-amd64-cpython-313/src/netCDF4/_netCDF4.o src/netCDF4/_netCDF4.c:9284:8: warning: passing 'const void *' to parameter of type 'void *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] 9284 | free(__pyx_v_self->memory); | ^~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:109:18: note: passing argument to parameter here 109 | void free(void *); | ^ 1 warning generated. cc -shared -fPIC -L/usr/local/lib/ -O2 -pipe build/temp.openbsd-7.8-amd64-cpython-313/external/nc_complex/src/nc_complex.o build/temp.openbsd-7.8-amd64-cpython-313/src/netCDF4/_netCDF4.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-rpath,/usr/local/lib -lnetcdf -o build/lib.openbsd-7.8-amd64-cpython-313/netCDF4/_netCDF4.cpython-313.so installing to build/bdist.openbsd-7.8-amd64/wheel running install running install_lib creating build/bdist.openbsd-7.8-amd64/wheel creating build/bdist.openbsd-7.8-amd64/wheel/netCDF4 copying build/lib.openbsd-7.8-amd64-cpython-313/netCDF4/__init__.py -> build/bdist.openbsd-7.8-amd64/wheel/./netCDF4 copying build/lib.openbsd-7.8-amd64-cpython-313/netCDF4/utils.py -> build/bdist.openbsd-7.8-amd64/wheel/./netCDF4 copying build/lib.openbsd-7.8-amd64-cpython-313/netCDF4/__init__.pyi -> build/bdist.openbsd-7.8-amd64/wheel/./netCDF4 copying build/lib.openbsd-7.8-amd64-cpython-313/netCDF4/_netCDF4.pyi -> build/bdist.openbsd-7.8-amd64/wheel/./netCDF4 copying build/lib.openbsd-7.8-amd64-cpython-313/netCDF4/_netCDF4.pyx -> build/bdist.openbsd-7.8-amd64/wheel/./netCDF4 copying build/lib.openbsd-7.8-amd64-cpython-313/netCDF4/py.typed -> build/bdist.openbsd-7.8-amd64/wheel/./netCDF4 creating build/bdist.openbsd-7.8-amd64/wheel/netCDF4/plugins copying build/lib.openbsd-7.8-amd64-cpython-313/netCDF4/plugins/empty.txt -> build/bdist.openbsd-7.8-amd64/wheel/./netCDF4/plugins copying build/lib.openbsd-7.8-amd64-cpython-313/netCDF4/_netCDF4.cpython-313.so -> build/bdist.openbsd-7.8-amd64/wheel/./netCDF4 running install_egg_info Copying src/netCDF4.egg-info to build/bdist.openbsd-7.8-amd64/wheel/./netCDF4-1.7.2-py3.13.egg-info running install_scripts creating build/bdist.openbsd-7.8-amd64/wheel/netcdf4-1.7.2.dist-info/WHEEL creating '/exopi-obj/pobj/py-netcdf4-1.7.2/netcdf4-1.7.2/dist/.tmp-5ebi6l0a/netcdf4-1.7.2-cp313-cp313-openbsd_7_8_amd64.whl' and adding 'build/bdist.openbsd-7.8-amd64/wheel' to it adding 'netCDF4/__init__.py' adding 'netCDF4/__init__.pyi' adding 'netCDF4/_netCDF4.cpython-313.so' adding 'netCDF4/_netCDF4.pyi' adding 'netCDF4/_netCDF4.pyx' adding 'netCDF4/py.typed' adding 'netCDF4/utils.py' adding 'netCDF4/plugins/empty.txt' adding 'netcdf4-1.7.2.dist-info/licenses/LICENSE' adding 'netcdf4-1.7.2.dist-info/METADATA' adding 'netcdf4-1.7.2.dist-info/WHEEL' adding 'netcdf4-1.7.2.dist-info/entry_points.txt' adding 'netcdf4-1.7.2.dist-info/top_level.txt' adding 'netcdf4-1.7.2.dist-info/RECORD' removing build/bdist.openbsd-7.8-amd64/wheel Successfully built netcdf4-1.7.2-cp313-cp313-openbsd_7_8_amd64.whl >>> Running package in math/py-netcdf4 at 1764688591.49 ===> math/py-netcdf4 ===> Faking installation for py3-netcdf4-1.7.2p2 ===> Building package for py3-netcdf4-1.7.2p2 Create /exopi-cvs/ports/packages/amd64/all/py3-netcdf4-1.7.2p2.tgz Creating package py3-netcdf4-1.7.2p2 reading plist| checking dependencies| checking dependencies|devel/py-certifi checking dependencies|lang/cython checking dependencies|lang/python/3,-main checking dependencies|math/hdf5 checking dependencies|math/py-cftime checking dependencies|math/py-numpy checking dependencies|devel/py-certifi checking dependencies|lang/cython checking dependencies|lang/python/3,-main checking dependencies|math/hdf5 checking dependencies|math/py-cftime checking dependencies|math/py-numpy checking dependencies|lang/cython checking dependencies|lang/python/3,-main checking dependencies|math/netcdf checksumming| checksumming| | 0% checksumming|* | 2% checksumming|*** | 5% checksumming|**** | 7% checksumming|****** | 10% checksumming|******* | 12% checksumming|********* | 15% checksumming|********** | 17% checksumming|************ | 20% checksumming|************* | 22% checksumming|*************** | 24% checksumming|**************** | 27% checksumming|****************** | 29% checksumming|******************* | 32% checksumming|********************* | 34% checksumming|********************** | 37% checksumming|************************ | 39% checksumming|************************* | 41% checksumming|*************************** | 44% checksumming|**************************** | 46% checksumming|****************************** | 49% checksumming|******************************* | 51% checksumming|********************************* | 54% checksumming|********************************** | 56% checksumming|************************************ | 59% checksumming|************************************* | 61% checksumming|*************************************** | 63% checksumming|**************************************** | 66% checksumming|****************************************** | 68% checksumming|******************************************* | 71% checksumming|********************************************* | 73% checksumming|********************************************** | 76% checksumming|************************************************ | 78% checksumming|************************************************* | 80% checksumming|*************************************************** | 83% checksumming|**************************************************** | 85% checksumming|****************************************************** | 88% checksumming|******************************************************* | 90% checksumming|********************************************************* | 93% checksumming|********************************************************** | 95% checksumming|************************************************************ | 98% checksumming|*************************************************************|100% archiving| archiving| | 0% archiving|* | 2% archiving|*** | 4% archiving|*************************************************** | 80% archiving|**************************************************** | 81% archiving|*************************************************************** | 98% archiving|****************************************************************|100% Link to /exopi-cvs/ports/packages/amd64/ftp/py3-netcdf4-1.7.2p2.tgz >>> Running clean in math/py-netcdf4 at 1764688600.63 ===> math/py-netcdf4 ===> Cleaning for py3-netcdf4-1.7.2p2 >>> Ended at 1764688600.93 max_stuck=29.46/depends=8.66/show-prepare-results=2.88/extract=0.39/build=46.64/package=9.14/clean=0.33