>>> Building on exopi-2 under misc/openbabel BDEPENDS = [devel/cmake;devel/ninja;textproc/libxml;graphics/cairo;devel/boost;archivers/bzip2;textproc/rapidjson;math/eigen3] DIST = [misc/openbabel:openbabel-3.1.1-source.tar.bz2] FULLPKGNAME = openbabel-3.1.1p3 RDEPENDS = [graphics/cairo;devel/boost;textproc/libxml] (Junk lock obtained for exopi-2 at 1732146121.84) >>> Running depends in misc/openbabel at 1732146121.88 last junk was in net/ruby-eventmachine,ruby33 /usr/sbin/pkg_add -aI -Drepair boost-1.84.0p4v0 bzip2-1.0.8p0 cairo-1.18.2p0 cmake-3.30.5v1 eigen3-3.4.0p0 ninja-1.11.1p0v0 rapidjson-1.1.0.20230928p0 was: /usr/sbin/pkg_add -aI -Drepair boost-1.84.0p4v0 bzip2-1.0.8p0 cairo-1.18.2p0 cmake-3.30.5v1 eigen3-3.4.0p0 libxml-2.13.5 ninja-1.11.1p0v0 rapidjson-1.1.0.20230928p0 /usr/sbin/pkg_add -aI -Drepair boost-1.84.0p4v0 bzip2-1.0.8p0 cairo-1.18.2p0 cmake-3.30.5v1 eigen3-3.4.0p0 ninja-1.11.1p0v0 rapidjson-1.1.0.20230928p0 >>> Running show-prepare-results in misc/openbabel at 1732146149.05 ===> misc/openbabel ===> Building from scratch openbabel-3.1.1p3 ===> openbabel-3.1.1p3 depends on: eigen3-* -> eigen3-3.4.0p0 ===> openbabel-3.1.1p3 depends on: rapidjson-* -> rapidjson-1.1.0.20230928p0 ===> openbabel-3.1.1p3 depends on: cmake-* -> cmake-3.30.5v1 ===> openbabel-3.1.1p3 depends on: ninja-* -> ninja-1.11.1p0v0 ===> openbabel-3.1.1p3 depends on: bzip2-* -> bzip2-1.0.8p0 ===> openbabel-3.1.1p3 depends on: boost-* -> boost-1.84.0p4v0 ===> openbabel-3.1.1p3 depends on: cairo-* -> cairo-1.18.2p0 ===> openbabel-3.1.1p3 depends on: libxml-* -> libxml-2.13.5 ===> Verifying specs: c++ c++abi pthread boost_iostreams-mt boost_regex-mt c cairo m xml2 z ===> found c++.10.0 c++abi.7.0 pthread.27.1 boost_iostreams-mt.23.0 boost_regex-mt.23.0 c.100.3 cairo.13.5 m.10.1 xml2.21.0 z.7.1 boost-1.84.0p4v0 bzip2-1.0.8p0 cairo-1.18.2p0 cmake-3.30.5v1 eigen3-3.4.0p0 libxml-2.13.5 ninja-1.11.1p0v0 rapidjson-1.1.0.20230928p0 (Junk lock released for exopi-2 at 1732146150.81) Woken up textproc/apertium-dicts/fra-cat distfiles size=27743669 >>> Running patch in misc/openbabel at 1732146150.84 ===> misc/openbabel ===> Checking files for openbabel-3.1.1p3 `/exopi-cvs/ports/distfiles/openbabel-3.1.1-source.tar.bz2' is up to date. >> (SHA256) all files: OK ===> Extracting for openbabel-3.1.1p3 ===> Patching for openbabel-3.1.1p3 ===> Applying OpenBSD patch patch-CMakeLists_txt Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Revise for 3.1.1 release. Taken from |https://github.com/openbabel/openbabel/commit/650b1f829ac47cc84877a330366ec9485da3ec99 | |Index: CMakeLists.txt |--- CMakeLists.txt.orig |+++ CMakeLists.txt -------------------------- Patching file CMakeLists.txt using Plan A... Hunk #1 succeeded at 24. done ===> Applying OpenBSD patch patch-include_openbabel_inchiformat_h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: include/openbabel/inchiformat.h |--- include/openbabel/inchiformat.h.orig |+++ include/openbabel/inchiformat.h -------------------------- Patching file include/openbabel/inchiformat.h using Plan A... Hunk #1 succeeded at 131. done ===> Applying OpenBSD patch patch-include_openbabel_plugin_h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: include/openbabel/plugin.h |--- include/openbabel/plugin.h.orig |+++ include/openbabel/plugin.h -------------------------- Patching file include/openbabel/plugin.h using Plan A... Hunk #1 succeeded at 38. done ===> Applying OpenBSD patch patch-scripts_openbabel-R_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-R.i |--- scripts/openbabel-R.i.orig |+++ scripts/openbabel-R.i -------------------------- Patching file scripts/openbabel-R.i using Plan A... Hunk #1 succeeded at 290. done ===> Applying OpenBSD patch patch-scripts_openbabel-csharp_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-csharp.i |--- scripts/openbabel-csharp.i.orig |+++ scripts/openbabel-csharp.i -------------------------- Patching file scripts/openbabel-csharp.i using Plan A... Hunk #1 succeeded at 830. done ===> Applying OpenBSD patch patch-scripts_openbabel-java_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-java.i |--- scripts/openbabel-java.i.orig |+++ scripts/openbabel-java.i -------------------------- Patching file scripts/openbabel-java.i using Plan A... Hunk #1 succeeded at 246. done ===> Applying OpenBSD patch patch-scripts_openbabel-perl_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-perl.i |--- scripts/openbabel-perl.i.orig |+++ scripts/openbabel-perl.i -------------------------- Patching file scripts/openbabel-perl.i using Plan A... Hunk #1 succeeded at 191. done ===> Applying OpenBSD patch patch-scripts_openbabel-php_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-php.i |--- scripts/openbabel-php.i.orig |+++ scripts/openbabel-php.i -------------------------- Patching file scripts/openbabel-php.i using Plan A... Hunk #1 succeeded at 223. done ===> Applying OpenBSD patch patch-scripts_openbabel-python_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-python.i |--- scripts/openbabel-python.i.orig |+++ scripts/openbabel-python.i -------------------------- Patching file scripts/openbabel-python.i using Plan A... Hunk #1 succeeded at 266. done ===> Applying OpenBSD patch patch-scripts_openbabel-ruby_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-ruby.i |--- scripts/openbabel-ruby.i.orig |+++ scripts/openbabel-ruby.i -------------------------- Patching file scripts/openbabel-ruby.i using Plan A... Hunk #1 succeeded at 212. done ===> Applying OpenBSD patch patch-src_ops_sort_cpp Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: src/ops/sort.cpp |--- src/ops/sort.cpp.orig |+++ src/ops/sort.cpp -------------------------- Patching file src/ops/sort.cpp using Plan A... Hunk #1 succeeded at 29. done ===> Compiler link: clang -> /usr/bin/clang ===> Compiler link: clang++ -> /usr/bin/clang++ ===> Compiler link: cc -> /usr/bin/cc ===> Compiler link: c++ -> /usr/bin/c++ >>> Running configure in misc/openbabel at 1732146166.81 ===> misc/openbabel ===> Generating configure for openbabel-3.1.1p3 ===> Configuring for openbabel-3.1.1p3 CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is Clang 16.0.6 -- The CXX compiler identification is Clang 16.0.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /exopi-obj/pobj/openbabel-3.1.1/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /exopi-obj/pobj/openbabel-3.1.1/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Using included inchi library. -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Found LibXml2: /usr/local/lib/libxml2.so.21.0 (found version "2.13.5") -- Found ZLIB: /usr/lib/libz.so.7.1 (found version "1.3.1.1") -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Failed -- Use std::shared_ptr in memory CMake Warning (dev) at CMakeLists.txt:358 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found version "1.84.0") found components: program_options iostreams regex -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") CMake Warning (dev) at CMakeLists.txt:473 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found version "1.84.0") found components: filesystem iostreams unit_test_framework regex -- maeparser include dir set as 'maeparser_INCLUDE_DIRS-NOTFOUND' -- maeparser libraries set as 'maeparser_LIBRARIES-NOTFOUND' -- Could NOT find maeparser (missing: maeparser_INCLUDE_DIRS maeparser_LIBRARIES) -- Building existing MaeParser 'v1.2.3' source at /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3. CMake Warning (dev) at external/maeparser-v1.2.3/maeparser/CMakeLists.txt:40 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found version "1.84.0") found components: iostreams regex CMake Warning (dev) at external/maeparser-v1.2.3/maeparser/CMakeLists.txt:44 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost (missing: Boost_DIR) -- Could NOT find Boost (missing: zlib) (found version "1.84.0") -- Using zlib library for iostreams dependency. -- Maestro formats will be supported. Using MaeParser 'v1.2.3' at /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -- coordgen include dir set as coordgen_INCLUDE_DIRS-NOTFOUND -- coordgen libraries set as 'coordgen_LIBRARIES-NOTFOUND' -- coordgen templates file set as 'coordgen_TEMPLATE_FILE-NOTFOUND' -- Could NOT find coordgen (missing: coordgen_INCLUDE_DIRS coordgen_LIBRARIES coordgen_TEMPLATE_FILE) -- Building existing Coordgen 'master' source at /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master. CMake Deprecation Warning at external/coordgen-master/coordgen/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Coordinate generation with Coordgen will be supported Using Coordgen 'master' at /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -- Found RapidJSON: /usr/local/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/local/include -- Checking for module 'cairo' -- Found cairo, version 1.18.2 -- Found Cairo: /usr/local/lib/libcairo.so.13.5 -- Cairo found. PNG output will be supported. CMake Warning (dev) at src/CMakeLists.txt:6 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found suitable version "1.84.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Check if compiler accepts -pthread -- Check if compiler accepts -pthread - yes -- Found Threads: TRUE CMake Warning (dev) at tools/CMakeLists.txt:6 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found version "1.84.0") found components: program_options iostreams regex -- Looking for getopt -- Looking for getopt - found -- GUI will not be built CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): test/CMakeLists.txt:226 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.11 (found version "3.11.10") CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring done (18.9s) -- Generating done (1.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_ASM_COMPILER_AR CMAKE_ASM_COMPILER_RANLIB CMAKE_Fortran_COMPILER_AR CMAKE_Fortran_COMPILER_RANLIB CMAKE_OBJCXX_COMPILER_AR CMAKE_OBJCXX_COMPILER_RANLIB CMAKE_OBJC_COMPILER_AR CMAKE_OBJC_COMPILER_RANLIB PYTHON_INCLUDE_DIR PYTHON_LIBRARY_DIRS Python3_EXECUTABLE Python3_INCLUDE_DIR Python3_LIBRARY_DIRS Python_EXECUTABLE Python_INCLUDE_DIR Python_LIBRARY_DIRS -- Build files have been written to: /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1 >>> Running build in misc/openbabel at 1732146187.14 ===> misc/openbabel ===> Building for openbabel-3.1.1p3 Change Dir: '/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1' Run Build Command(s): /usr/local/bin/ninja -v -j 1 [1/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -Dmaeparser_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Buffer.cpp.o -MF external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Buffer.cpp.o.d -o external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Buffer.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser/Buffer.cpp [2/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -Dmaeparser_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeBlock.cpp.o -MF external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeBlock.cpp.o.d -o external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeBlock.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser/MaeBlock.cpp [3/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -Dmaeparser_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeParser.cpp.o -MF external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeParser.cpp.o.d -o external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeParser.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser/MaeParser.cpp [4/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -Dmaeparser_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT 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/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/confsearch.cpp:134:59: warning: 'bind2nd, double>' is deprecated [-Wdeprecated-declarations] vec.erase(std::remove_if(vec.begin(), vec.end(), std::bind2nd(std::less(), (cutoff + 0.1) )), vec.end()); ^ /usr/include/c++/v1/__functional/binder2nd.h:44:1: note: 'bind2nd, double>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/confsearch.cpp:444:70: warning: 'bind2nd, double>' is deprecated [-Wdeprecated-declarations] transform(_energies.begin(), _energies.end(), _energies.begin(), bind2nd(std::plus(), energy_offset)); ^ /usr/include/c++/v1/__functional/binder2nd.h:44:1: note: 'bind2nd, double>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ 2 warnings generated. 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-I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/stereo/perception.cpp /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/stereo/perception.cpp:2973:80: warning: 'bind1st, unsigned long>' is deprecated [-Wdeprecated-declarations] const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); ^ /usr/include/c++/v1/__functional/binder1st.h:44:1: note: 'bind1st, unsigned long>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/stereo/perception.cpp:2973:16: warning: 'binder1st>' is deprecated [-Wdeprecated-declarations] const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); ^ /usr/include/c++/v1/__functional/binder1st.h:25:28: note: 'binder1st>' has been explicitly marked deprecated here class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 binder1st ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/stereo/perception.cpp:3005:85: warning: 'bind1st, unsigned long>' is deprecated [-Wdeprecated-declarations] const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); ^ /usr/include/c++/v1/__functional/binder1st.h:44:1: note: 'bind1st, unsigned long>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/stereo/perception.cpp:3005:16: warning: 'binder1st>' is deprecated [-Wdeprecated-declarations] const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); ^ /usr/include/c++/v1/__functional/binder1st.h:25:28: note: 'binder1st>' has been explicitly marked deprecated here class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 binder1st ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ 4 warnings generated. 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-I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/descriptors/filters.cpp [102/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_descriptors_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp In file included from /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:24: /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] while(p1!=s1.end() && isdigit(*p1++)); --p1; ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] while(p2!=s2.end() && isdigit(*p2++)); --p2; ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning 2 warnings generated. [103/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_descriptors_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp [104/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/plugin_descriptors.so src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -Wl,-z,origin,-rpath,/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib:/usr/local/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 lib/libopenbabel.so.6.1 lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [105/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_fingerprints_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/fingerprints/finger2.cpp [106/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_fingerprints_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/fingerprints/finger3.cpp /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/fingerprints/finger3.cpp:258:34: warning: unsequenced modification and access to 'div' [-Wunsequenced] ngrp = (num + div -1)/div--; //rounds up ~~~ ^ 1 warning generated. [107/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_fingerprints_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp [108/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/plugin_fingerprints.so src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -Wl,-z,origin,-rpath,/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib:/usr/local/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 lib/libopenbabel.so.6.1 lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [109/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_forcefields_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp [110/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_forcefields_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp [111/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_forcefields_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp [112/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_forcefields_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/forcefields/forcefielduff.cpp [113/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/plugin_forcefields.so src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -Wl,-z,origin,-rpath,/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib:/usr/local/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 lib/libopenbabel.so.6.1 lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [114/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dplugin_ops_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master 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-MT src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/charges/qtpie.cpp [149/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/plugin_charges.so src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -Wl,-z,origin,-rpath,/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib:/usr/local/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 lib/libopenbabel.so.6.1 lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [150/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dsmilesformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/smilesformat.cpp [151/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmdlformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/mdlformat.cpp [152/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmol2format_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/mol2format.cpp [153/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dpdbformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/pdbformat.cpp [154/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dinchiformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/inchiformat.cpp In file included from /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/inchiformat.cpp:32: /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] while(p1!=s1.end() && isdigit(*p1++)); --p1; ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] while(p2!=s2.end() && isdigit(*p2++)); --p2; ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning 2 warnings generated. [155/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dinchiformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/getinchi.cpp [156/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dinchiformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/ops/unique.cpp In file included from /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/ops/unique.cpp:23: /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] while(p1!=s1.end() && isdigit(*p1++)); --p1; ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] while(p2!=s2.end() && isdigit(*p2++)); --p2; ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning 2 warnings generated. [157/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dasciiformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/asciiformat.cpp [158/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dasciiformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/depict/asciipainter.cpp [159/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dcopyformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -MF src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o.d -o src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/copyformat.cpp [160/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -MF src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o.d -o src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/MNAformat.cpp [161/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmolreport_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread 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-I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/depict/commandpainter.cpp [165/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dpovrayformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/povrayformat.cpp /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/povrayformat.cpp:526:71: warning: 'bind1st, char>' is deprecated [-Wdeprecated-declarations] bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); ^ /usr/include/c++/v1/__functional/binder1st.h:44:1: note: 'bind1st, char>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/povrayformat.cpp:587:71: warning: 'bind1st, char>' is deprecated [-Wdeprecated-declarations] bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); ^ /usr/include/c++/v1/__functional/binder1st.h:44:1: note: 'bind1st, char>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ 2 warnings generated. 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-I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -MF src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o.d -o src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/crystal09format.cpp [178/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Ddaltonformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -MF src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o.d -o src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/daltonformat.cpp [179/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Ddmolformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/dmolformat.cpp [180/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dfchkformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/fchkformat.cpp /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/fchkformat.cpp:668:36: warning: 'bind2nd, int>' is deprecated [-Wdeprecated-declarations] bind2nd(less_equal(), 0)) || ^ /usr/include/c++/v1/__functional/binder2nd.h:44:1: note: 'bind2nd, int>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/fchkformat.cpp:671:36: warning: 'bind2nd, int>' is deprecated [-Wdeprecated-declarations] bind2nd(greater(), MxBond)) || ^ /usr/include/c++/v1/__functional/binder2nd.h:44:1: note: 'bind2nd, int>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/fchkformat.cpp:674:36: warning: 'bind2nd, int>' is deprecated [-Wdeprecated-declarations] bind2nd(less(), 0)) || ^ /usr/include/c++/v1/__functional/binder2nd.h:44:1: note: 'bind2nd, int>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/fchkformat.cpp:677:36: warning: 'bind2nd, int>' is deprecated [-Wdeprecated-declarations] bind2nd(greater(), Natoms))) ^ /usr/include/c++/v1/__functional/binder2nd.h:44:1: note: 'bind2nd, int>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ 4 warnings generated. 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src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -MF src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o.d -o src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/turbomoleformat.cpp [196/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dvaspformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 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/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/vaspformat.cpp:589:29: warning: 'bind2nd, double>' is deprecated [-Wdeprecated-declarations] std::bind2nd(std::divides(), max / 100.0)); ^ /usr/include/c++/v1/__functional/binder2nd.h:44:1: note: 'bind2nd, double>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ 2 warnings generated. 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src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/lpmdformat.cpp [237/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmdffformat_EXPORTS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o -MF src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o.d -o src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/mdffformat.cpp /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/mdffformat.cpp:136:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] string path = (found == string::npos) ? "" : path.substr(0, found); ~~~~ ^~~~ 1 warning generated. 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-I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -MF src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o.d -o src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/chemkinformat.cpp /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] switch(pRD->ReactionType) ^~~~~~~~~~~~~~~~~ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] switch(pRD->ReactionType) ^~~~~~~~~~~~~~~~~ 2 warnings generated. 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-I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -MF src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o.d -o src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/xml/cmlreactformat.cpp /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/xml/cmlreactformat.cpp:706:10: warning: enumeration value 'ARRHENIUS' not handled in switch [-Wswitch] switch(pRD->ReactionType) ^~~~~~~~~~~~~~~~~ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/src/formats/xml/cmlreactformat.cpp:734:10: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] switch(pRD->ReactionType) ^~~~~~~~~~~~~~~~~ 2 warnings generated. 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[326/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/mdlformat.so src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [327/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/mol2format.so src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [328/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/pdbformat.so src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [329/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/inchiformat.so src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : ld: warning: inchiformat.cpp(src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o:(OpenBabel::InChIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*))): warning: strcpy() is almost always misused, please use strlcpy() [330/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/asciiformat.so src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [331/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/copyformat.so src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [332/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/MNAformat.so src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [333/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/molreport.so src/formats/CMakeFiles/molreport.dir/molreport.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [334/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/nulformat.so src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [335/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/painterformat.so src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [336/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/povrayformat.so src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [337/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/reportformat.so src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o 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/usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [339/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/textformat.so src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [340/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/titleformat.so src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o 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/usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [342/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/pngformat.so src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [343/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/acesformat.so src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o 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/usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [345/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/adfformat.so src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [346/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/aoforceformat.so src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [347/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/castepformat.so src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [348/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/crystal09format.so src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [349/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/daltonformat.so src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [350/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/dmolformat.so src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [351/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/fchkformat.so src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [352/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/fhiaimsformat.so src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [353/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/gamessformat.so src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [354/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/gaussformat.so src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : ld: warning: gaussformat.cpp(src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o:(OpenBabel::GaussianOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*))): warning: sprintf() is often misused, please use snprintf() [355/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/gausscubeformat.so src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [356/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/gausszmatformat.so src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [357/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/gulpformat.so src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [358/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/hinformat.so src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [359/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/jaguarformat.so src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [360/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/molproformat.so src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [361/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/mopacformat.so src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : ld: warning: mopacformat.cpp(src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o:(OpenBabel::MOPACCARTFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*))): warning: strcpy() is almost always misused, please use strlcpy() [362/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/nwchemformat.so src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [363/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/pwscfformat.so src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [364/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/qchemformat.so src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [365/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/siestaformat.so src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [366/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/turbomoleformat.so src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : ld: warning: turbomoleformat.cpp(src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o:(OpenBabel::TurbomoleFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*))): warning: strcpy() is almost always misused, please use strlcpy() [367/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/vaspformat.so src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [368/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/xsfformat.so src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [369/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/zindoformat.so src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [370/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/maeformat.so src/formats/CMakeFiles/maeformat.dir/maeformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [371/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/gamessukformat.so src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [372/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/orcaformat.so src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [373/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/APIInterface.so src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [374/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/CSRformat.so src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [375/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/PQSformat.so src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : ld: warning: PQSformat.cpp(src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o:(OpenBabel::PQSFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*))): warning: strcat() is almost always misused, please use strlcat() [376/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/MCDLformat.so src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : ld: warning: MCDLformat.cpp(src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o:(OpenBabel::MCDLFormat::constring(int (*) [4], char*))): warning: sprintf() is often misused, please use snprintf() ld: warning: MCDLformat.cpp(src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o:(OpenBabel::MCDLFormat::solve(int, int (*) [4], int))): warning: strcpy() is almost always misused, please use strlcpy() [377/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/alchemyformat.so src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [378/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/acrformat.so src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [379/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/amberformat.so src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [380/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/balstformat.so src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [381/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/bgfformat.so src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [382/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/boxformat.so src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [383/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/cacaoformat.so src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [384/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/cacheformat.so src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [385/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/carformat.so src/formats/CMakeFiles/carformat.dir/carformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [386/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/cccformat.so src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 /usr/local/lib/libcairo.so.13.5 lib/libinchi.so.0.0 -lm lib/libopenbabel.so.6.1 /usr/local/lib/libcairo.so.13.5 -lc -lm lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [387/556] : && /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -DNDEBUG -shared -o lib/chem3dformat.so 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-I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIE -pthread -MD -MT test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o -MF test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o.d -o test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/spectrophoretest.cpp [510/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DFORMATDIR=\"/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DTESTDATADIR=\"/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIE -pthread -MD -MT test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o -MF test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o.d -o test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/squareplanartest.cpp [511/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DFORMATDIR=\"/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DTESTDATADIR=\"/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIE -pthread -MD -MT test/CMakeFiles/test_runner.dir/stereotest.cpp.o -MF test/CMakeFiles/test_runner.dir/stereotest.cpp.o.d -o test/CMakeFiles/test_runner.dir/stereotest.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/stereotest.cpp /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] switch (units.at(i).type) { ^~~~~~~~~~~~~~~~ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] switch (units.at(i).type) { ^~~~~~~~~~~~~~~~ 2 warnings generated. [512/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DFORMATDIR=\"/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DTESTDATADIR=\"/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIE -pthread -MD -MT test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o -MF test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o.d -o test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o -c /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/stereoperceptiontest.cpp /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] // / \ ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] // / \ ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] // \ ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] // \ ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] // \ ^ /exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] // \ ^ 6 warnings generated. [513/556] /exopi-obj/pobj/openbabel-3.1.1/bin/c++ -DFORMATDIR=\"/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DTESTDATADIR=\"/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -I/usr/local/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/include -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/test -I/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -O2 -pipe -DNDEBUG -std=gnu++11 -fPIE -pthread -MD -MT test/CMakeFiles/test_runner.dir/tautomertest.cpp.o -MF test/CMakeFiles/test_runner.dir/tautomertest.cpp.o.d -o test/CMakeFiles/test_runner.dir/tautomertest.cpp.o -c 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-Wl,-z,origin,-rpath,/exopi-obj/pobj/openbabel-3.1.1/openbabel-3.1.1/lib:/usr/local/lib: lib/libopenbabel.so.6.1 lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.1 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : >>> Running fake in misc/openbabel at 1732147570.35 ===> misc/openbabel ===> Faking installation for openbabel-3.1.1p3 -- Install configuration: "Release" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/include/openbabel3/openbabel/babelconfig.h -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/pkgconfig/openbabel-3.pc -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/cmake/openbabel3/OpenBabel3_EXPORTS.cmake -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/cmake/openbabel3/OpenBabel3_EXPORTS-release.cmake -- Installing: 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Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/share/openbabel/3.1.1/mmffchg.par -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/share/openbabel/3.1.1/mmffdef.par -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/share/openbabel/3.1.1/mmffdfsb.par -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/share/openbabel/3.1.1/mmffoop.par -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/share/openbabel/3.1.1/mmffpbci.par -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/share/openbabel/3.1.1/mmffprop.par -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/share/openbabel/3.1.1/mmffstbn.par -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/share/openbabel/3.1.1/mmfftor.par -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/share/openbabel/3.1.1/mmffvdw.par -- Installing: 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to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/inchiformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/inchiformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/asciiformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/asciiformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/copyformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/copyformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/MNAformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/MNAformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/molreport.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/molreport.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/nulformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/nulformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/painterformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/painterformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/povrayformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/povrayformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/reportformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/reportformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/svgformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/svgformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/textformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/textformat.so" to "/usr/local/lib" -- Installing: 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"/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/acesformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/abinitformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/abinitformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/adfformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/adfformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/aoforceformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/aoforceformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/castepformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/castepformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/crystal09format.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/crystal09format.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/daltonformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/daltonformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/dmolformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/dmolformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/fchkformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/fchkformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/fhiaimsformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/fhiaimsformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/gamessformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/gamessformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/gaussformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/gaussformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/gausscubeformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/gausscubeformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/gausszmatformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/gausszmatformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/gulpformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/gulpformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/hinformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/hinformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/jaguarformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/jaguarformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/molproformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/molproformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/mopacformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/mopacformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/nwchemformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/nwchemformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/pwscfformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/pwscfformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/qchemformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/qchemformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/siestaformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/siestaformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/turbomoleformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/turbomoleformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/vaspformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/vaspformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/xsfformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/xsfformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/zindoformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/zindoformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/maeformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/maeformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/gamessukformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/gamessukformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/orcaformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/orcaformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/APIInterface.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/APIInterface.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/CSRformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/CSRformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/PQSformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/PQSformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/MCDLformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/MCDLformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/alchemyformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/alchemyformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/acrformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/acrformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/amberformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/amberformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/balstformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/balstformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/bgfformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/bgfformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/boxformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/boxformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cacaoformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cacaoformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cacheformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cacheformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/carformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/carformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cccformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cccformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/chem3dformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/chem3dformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/chemdrawct.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/chemdrawct.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/chemtoolformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/chemtoolformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cifformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cifformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cofformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cofformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/crkformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/crkformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cssrformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cssrformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/dlpolyformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/dlpolyformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/exyzformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/exyzformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/fastsearchformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/fastsearchformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/fastaformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/fastaformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/featformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/featformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/fhformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/fhformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/fingerprintformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/fingerprintformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/fpsformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/fpsformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/freefracformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/freefracformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/ghemicalformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/ghemicalformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/gromos96format.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/gromos96format.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/groformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/groformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/lmpdatformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/lmpdatformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/lpmdformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/lpmdformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/mdffformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/mdffformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/mmcifformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/mmcifformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/mmodformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/mmodformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/moldenformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/moldenformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/mpdformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/mpdformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/mpqcformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/mpqcformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/msiformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/msiformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/msmsformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/msmsformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/opendxformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/opendxformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/outformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/outformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/pcmodelformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/pcmodelformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/pdbqtformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/pdbqtformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/pointcloudformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/pointcloudformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/posformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/posformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/pqrformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/pqrformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/shelxformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/shelxformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/smileyformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/smileyformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/stlformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/stlformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/thermoformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/thermoformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/tinkerformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/tinkerformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/unichemformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/unichemformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/viewmolformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/viewmolformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/wlnformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/wlnformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/xedformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/xedformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/xyzformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/xyzformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/yasaraformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/yasaraformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/rxnformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/rxnformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/chemdrawcdx.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/chemdrawcdx.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/chemkinformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/chemkinformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/rinchiformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/rinchiformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/rsmiformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/rsmiformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/png2format.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/png2format.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cdxmlformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cdxmlformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cmlformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cmlformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/pubchem.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/pubchem.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/xmlformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/xmlformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cmlreactformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/cmlreactformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/chemdoodlejsonformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/chemdoodlejsonformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/pubchemjsonformat.so -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/openbabel/3.1.1/pubchemjsonformat.so" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/libinchi.so.0.0 -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/lib/libinchi.so.0.0" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obabel -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obabel" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obconformer -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obconformer" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obenergy -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obenergy" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obfit -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obfit" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obfitall -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obfitall" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obgen -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obgen" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obminimize -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obminimize" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obmm -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obmm" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obprobe -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obprobe" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obprop -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obprop" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obrotamer -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obrotamer" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obrotate -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obrotate" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obsym -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obsym" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obtautomer -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obtautomer" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obthermo -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obthermo" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obdistgen -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obdistgen" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obgrep -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obgrep" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obspectrophore -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obspectrophore" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obrms -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/obrms" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/roundtrip -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/usr/local/bin/roundtrip" to "/usr/local/lib" >>> Running package in misc/openbabel at 1732147571.20 ===> misc/openbabel `/exopi-obj/pobj/openbabel-3.1.1/fake-amd64/.fake_done' is up to date. ===> Building package for openbabel-3.1.1p3 Create /exopi-cvs/ports/packages/amd64/all/openbabel-3.1.1p3.tgz 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max_stuck=20.12/depends=27.18/show-prepare-results=1.78/patch=15.97/configure=20.34/build=1383.22/fake=0.85/package=9.34/clean=1.98