>>> Building on exopi-5 under biology/p5-Bio-Variation DIST = [biology/p5-Bio-Variation:Bio-Variation-1.7.5.tar.gz] FULLPKGNAME = p5-Bio-Variation-1.7.5 RDEPENDS = [devel/p5-IO-String;textproc/p5-XML-Twig;textproc/p5-XML-Writer;biology/bioperl;biology/p5-Bio-DB-EMBL;biology/p5-Bio-DB-NCBIHelper] distfiles size=60430 >>> Running build in biology/p5-Bio-Variation at 1731867565.60 ===> biology/p5-Bio-Variation ===> Building from scratch p5-Bio-Variation-1.7.5 ===> Checking files for p5-Bio-Variation-1.7.5 `/exopi-cvs/ports/distfiles/Bio-Variation-1.7.5.tar.gz' is up to date. >> (SHA256) all files: OK ===> Extracting for p5-Bio-Variation-1.7.5 ===> Patching for p5-Bio-Variation-1.7.5 ===> Compiler link: clang -> /usr/bin/clang ===> Compiler link: clang++ -> /usr/bin/clang++ ===> Compiler link: cc -> /usr/bin/cc ===> Compiler link: c++ -> /usr/bin/c++ ===> Generating configure for p5-Bio-Variation-1.7.5 ===> Configuring for p5-Bio-Variation-1.7.5 Warning: prerequisite Bio::DBLinkContainerI 0 not found. Warning: prerequisite Bio::PrimarySeq 0 not found. Warning: prerequisite Bio::Root::IO 0 not found. Warning: prerequisite Bio::Root::Root 0 not found. Warning: prerequisite Bio::Root::Test 0 not found. Warning: prerequisite Bio::SeqFeature::Generic 0 not found. Warning: prerequisite Bio::SeqIO 0 not found. Warning: prerequisite Bio::Tools::CodonTable 0 not found. Warning: prerequisite IO::String 0 not found. Warning: prerequisite XML::Twig 0 not found. Warning: prerequisite XML::Writer 0.4 not found. Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Variation Writing MYMETA.yml and MYMETA.json ===> Building for p5-Bio-Variation-1.7.5 cp lib/Bio/Variation/IO/xml.pm blib/lib/Bio/Variation/IO/xml.pm cp lib/Bio/Variation/RNAChange.pm blib/lib/Bio/Variation/RNAChange.pm cp lib/Bio/Variation/AAChange.pm blib/lib/Bio/Variation/AAChange.pm cp lib/Bio/Variation/SeqDiff.pm blib/lib/Bio/Variation/SeqDiff.pm cp lib/Bio/Variation/IO.pm blib/lib/Bio/Variation/IO.pm cp lib/Bio/Variation/DNAMutation.pm blib/lib/Bio/Variation/DNAMutation.pm cp lib/Bio/Variation.pm blib/lib/Bio/Variation.pm cp lib/Bio/Variation/VariantI.pm blib/lib/Bio/Variation/VariantI.pm cp lib/Bio/Variation/SNP.pm blib/lib/Bio/Variation/SNP.pm cp lib/Bio/Variation/IO/flat.pm blib/lib/Bio/Variation/IO/flat.pm cp lib/Bio/Variation/AAReverseMutate.pm blib/lib/Bio/Variation/AAReverseMutate.pm cp lib/Bio/Variation/Allele.pm blib/lib/Bio/Variation/Allele.pm cp bin/bp_flanks blib/script/bp_flanks "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_flanks Manifying 1 pod document Manifying 12 pod documents >>> Running package in biology/p5-Bio-Variation at 1731867568.80 ===> biology/p5-Bio-Variation ===> Faking installation for p5-Bio-Variation-1.7.5 Manifying 1 pod document Manifying 12 pod documents Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/Variation.pm Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/Variation/RNAChange.pm Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/Variation/AAChange.pm Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/Variation/SeqDiff.pm Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/Variation/IO.pm Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/Variation/DNAMutation.pm Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/Variation/VariantI.pm Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/Variation/SNP.pm Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/Variation/AAReverseMutate.pm Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/Variation/Allele.pm Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/Variation/IO/xml.pm Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/Variation/IO/flat.pm Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/man/man1/bp_flanks.1 Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/man/man3p/Bio::Variation.3p Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/man/man3p/Bio::Variation::AAChange.3p Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/man/man3p/Bio::Variation::AAReverseMutate.3p Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/man/man3p/Bio::Variation::Allele.3p Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/man/man3p/Bio::Variation::DNAMutation.3p Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/man/man3p/Bio::Variation::IO.3p Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/man/man3p/Bio::Variation::IO::flat.3p Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/man/man3p/Bio::Variation::IO::xml.3p Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/man/man3p/Bio::Variation::RNAChange.3p Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/man/man3p/Bio::Variation::SNP.3p Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/man/man3p/Bio::Variation::SeqDiff.3p Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/man/man3p/Bio::Variation::VariantI.3p Installing /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/bin/bp_flanks Appending installation info to /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/./libdata/perl5/amd64-openbsd/perllocal.pod ===> Building package for p5-Bio-Variation-1.7.5 Create /exopi-cvs/ports/packages/amd64/no-arch/p5-Bio-Variation-1.7.5.tgz Creating package p5-Bio-Variation-1.7.5 reading plist| checking dependencies| checking dependencies|biology/bioperl checking dependencies|biology/p5-Bio-DB-EMBL checking dependencies|biology/p5-Bio-DB-NCBIHelper checking dependencies|devel/p5-IO-String checking dependencies|textproc/p5-XML-Twig checking dependencies|textproc/p5-XML-Writer 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archiving|****************************************** | 66% archiving|********************************************** | 72% archiving|************************************************** | 78% archiving|*************************************************** | 80% archiving|********************************************************* | 90% archiving|****************************************************************|100% /exopi-obj/pobj/p5-Bio-Variation-1.7.5/fake-amd64/usr/local/man/man3p/Bio::Variation.3p: No one-line description, using filename "Bio::Variation" Link to /exopi-cvs/ports/packages/amd64/all/p5-Bio-Variation-1.7.5.tgz Link to /exopi-cvs/ports/packages/amd64/ftp/p5-Bio-Variation-1.7.5.tgz >>> Running clean in biology/p5-Bio-Variation at 1731867575.75 ===> biology/p5-Bio-Variation ===> Cleaning for p5-Bio-Variation-1.7.5 >>> Ended at 1731867576.18 max_stuck=0.29/build=3.10/package=6.96/clean=0.53