>>> Building on exopi-5 under biology/p5-Bio-DB-NCBIHelper DIST = [biology/p5-Bio-DB-NCBIHelper:Bio-DB-NCBIHelper-1.7.8.tar.gz] FULLPKGNAME = p5-Bio-DB-NCBIHelper-1.7.8 RDEPENDS = [www/p5-URI;www/p5-HTTP-Message;textproc/p5-XML-Twig;biology/p5-Bio-ASN1-EntrezGene;www/p5-LWP-Protocol-https;biology/bioperl;devel/p5-Cache-Cache;www/p5-libwww;www/p5-CGI] distfiles size=45770 >>> Running build in biology/p5-Bio-DB-NCBIHelper at 1731867565.54 ===> biology/p5-Bio-DB-NCBIHelper ===> Building from scratch p5-Bio-DB-NCBIHelper-1.7.8 ===> Checking files for p5-Bio-DB-NCBIHelper-1.7.8 `/exopi-cvs/ports/distfiles/Bio-DB-NCBIHelper-1.7.8.tar.gz' is up to date. >> (SHA256) all files: OK ===> Extracting for p5-Bio-DB-NCBIHelper-1.7.8 ===> Patching for p5-Bio-DB-NCBIHelper-1.7.8 ===> Compiler link: clang -> /usr/bin/clang ===> Compiler link: clang++ -> /usr/bin/clang++ ===> Compiler link: cc -> /usr/bin/cc ===> Compiler link: c++ -> /usr/bin/c++ ===> Generating configure for p5-Bio-DB-NCBIHelper-1.7.8 ===> Configuring for p5-Bio-DB-NCBIHelper-1.7.8 Warning: prerequisite Bio::DB::Query::WebQuery v1.7.7 not found. Warning: prerequisite Bio::DB::Taxonomy 0 not found. Warning: prerequisite Bio::DB::WebDBSeqI 0 not found. Warning: prerequisite Bio::Root::IO 0 not found. Warning: prerequisite Bio::Root::Root 0 not found. Warning: prerequisite Bio::SeqIO 0 not found. Warning: prerequisite Bio::SeqIO::entrezgene 0 not found. Warning: prerequisite Bio::Taxon 0 not found. Warning: prerequisite Bio::WebAgent 0 not found. Warning: prerequisite CGI 0 not found. Warning: prerequisite Cache::FileCache 0 not found. Warning: prerequisite HTTP::Request::Common 0 not found. Warning: prerequisite LWP::Protocol::https 0 not found. Warning: prerequisite LWP::UserAgent 0 not found. Warning: prerequisite Test::Exception 0 not found. Warning: prerequisite Test::Most 0 not found. Warning: prerequisite Test::RequiresInternet 0 not found. Warning: prerequisite URI 0 not found. Warning: prerequisite URI::Escape 0 not found. Warning: prerequisite XML::Twig 0 not found. Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::DB::NCBIHelper Writing MYMETA.yml and MYMETA.json ===> Building for p5-Bio-DB-NCBIHelper-1.7.8 cp lib/Bio/DB/GenPept.pm blib/lib/Bio/DB/GenPept.pm cp lib/Bio/DB/NCBIHelper.pm blib/lib/Bio/DB/NCBIHelper.pm cp lib/Bio/DB/EntrezGene.pm blib/lib/Bio/DB/EntrezGene.pm cp lib/Bio/DB/Taxonomy/entrez.pm blib/lib/Bio/DB/Taxonomy/entrez.pm cp lib/Bio/DB/GenBank.pm blib/lib/Bio/DB/GenBank.pm cp lib/Bio/DB/Query/GenBank.pm blib/lib/Bio/DB/Query/GenBank.pm cp bin/bp_biofetch_genbank_proxy blib/script/bp_biofetch_genbank_proxy "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_biofetch_genbank_proxy cp bin/bp_download_query_genbank blib/script/bp_download_query_genbank "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_download_query_genbank cp bin/bp_query_entrez_taxa blib/script/bp_query_entrez_taxa "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_query_entrez_taxa Manifying 3 pod documents Manifying 6 pod documents >>> Running package in biology/p5-Bio-DB-NCBIHelper at 1731867569.01 ===> biology/p5-Bio-DB-NCBIHelper ===> Faking installation for p5-Bio-DB-NCBIHelper-1.7.8 Manifying 3 pod documents Manifying 6 pod documents Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/DB/GenPept.pm Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/DB/NCBIHelper.pm Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/DB/EntrezGene.pm Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/DB/GenBank.pm Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/DB/Taxonomy/entrez.pm Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/libdata/perl5/site_perl/Bio/DB/Query/GenBank.pm Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/man/man1/bp_biofetch_genbank_proxy.1 Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/man/man1/bp_download_query_genbank.1 Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/man/man1/bp_query_entrez_taxa.1 Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/man/man3p/Bio::DB::EntrezGene.3p Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/man/man3p/Bio::DB::GenBank.3p Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/man/man3p/Bio::DB::GenPept.3p Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/man/man3p/Bio::DB::NCBIHelper.3p Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/man/man3p/Bio::DB::Query::GenBank.3p Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/man/man3p/Bio::DB::Taxonomy::entrez.3p Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/bin/bp_biofetch_genbank_proxy Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/bin/bp_download_query_genbank Installing /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/local/bin/bp_query_entrez_taxa Appending installation info to /exopi-obj/pobj/p5-Bio-DB-NCBIHelper-1.7.8/fake-amd64/usr/./libdata/perl5/amd64-openbsd/perllocal.pod ===> Building package for p5-Bio-DB-NCBIHelper-1.7.8 Create /exopi-cvs/ports/packages/amd64/no-arch/p5-Bio-DB-NCBIHelper-1.7.8.tgz Creating package p5-Bio-DB-NCBIHelper-1.7.8 reading plist| checking dependencies| checking dependencies|biology/bioperl checking dependencies|biology/p5-Bio-ASN1-EntrezGene checking dependencies|devel/p5-Cache-Cache checking dependencies|textproc/p5-XML-Twig checking dependencies|www/p5-CGI checking dependencies|www/p5-HTTP-Message checking dependencies|www/p5-LWP-Protocol-https checking dependencies|www/p5-URI checking dependencies|www/p5-libwww checksumming| checksumming| | 0% checksumming|** | 3% checksumming|**** | 6% checksumming|***** | 9% checksumming|******* | 12% checksumming|********* | 15% checksumming|*********** | 18% checksumming|************* | 21% checksumming|************** | 24% checksumming|**************** | 26% checksumming|****************** | 29% checksumming|******************** | 32% checksumming|********************** | 35% checksumming|*********************** | 38% checksumming|************************* | 41% checksumming|*************************** | 44% checksumming|***************************** | 47% checksumming|******************************* | 50% checksumming|******************************** | 53% checksumming|********************************** | 56% checksumming|************************************ | 59% checksumming|************************************** | 62% checksumming|*************************************** | 65% 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/exopi-cvs/ports/packages/amd64/ftp/p5-Bio-DB-NCBIHelper-1.7.8.tgz >>> Running clean in biology/p5-Bio-DB-NCBIHelper at 1731867578.05 ===> biology/p5-Bio-DB-NCBIHelper ===> Cleaning for p5-Bio-DB-NCBIHelper-1.7.8 >>> Ended at 1731867578.40 max_stuck=0.69/build=3.47/package=9.01/clean=0.42