>>> Building on exopi-5 under math/igraph BDEPENDS = [textproc/libxml;devel/glpk;devel/gmp;devel/ninja;math/lapack;devel/dwz;math/suitesparse;devel/cmake;math/arpack] DIST = [math/igraph:igraph-0.10.15.tar.gz] FULLPKGNAME = igraph-0.10.15 RDEPENDS = [devel/gmp;devel/glpk;math/suitesparse;math/arpack;math/lapack;textproc/libxml] (Junk lock obtained for exopi-5 at 1734705524.14) >>> Running depends in math/igraph at 1734705524.18 last junk was in net/neochat /usr/sbin/pkg_add -aI -Drepair arpack-3.8.0p2v0 glpk-5.0 gmp-6.3.0 lapack-3.12.0 suitesparse-4.4.6p3 was: /usr/sbin/pkg_add -aI -Drepair arpack-3.8.0p2v0 cmake-3.31.2v1 dwz-0.15 glpk-5.0 gmp-6.3.0 lapack-3.12.0 libxml-2.13.5 ninja-1.11.1p0v0 suitesparse-4.4.6p3 /usr/sbin/pkg_add -aI -Drepair arpack-3.8.0p2v0 glpk-5.0 gmp-6.3.0 lapack-3.12.0 suitesparse-4.4.6p3 >>> Running show-prepare-results in math/igraph at 1734705528.42 ===> math/igraph ===> Building from scratch igraph-0.10.15 ===> igraph-0.10.15 depends on: cmake-* -> cmake-3.31.2v1 ===> igraph-0.10.15 depends on: ninja-* -> ninja-1.11.1p0v0 ===> igraph-0.10.15 depends on: dwz-* -> dwz-0.15 ===> igraph-0.10.15 depends on: glpk-* -> glpk-5.0 ===> igraph-0.10.15 depends on: gmp-* -> gmp-6.3.0 ===> igraph-0.10.15 depends on: arpack-* -> arpack-3.8.0p2v0 ===> igraph-0.10.15 depends on: lapack-* -> lapack-3.12.0 ===> igraph-0.10.15 depends on: suitesparse-* -> suitesparse-4.4.6p3 ===> igraph-0.10.15 depends on: libxml-* -> libxml-2.13.5 ===> Verifying specs: c++ c++abi pthread m arpack blas cxsparse glpk gmp lapack xml2 ===> found c++.10.0 c++abi.7.0 pthread.27.1 m.10.1 arpack.2.0 blas.2.1 cxsparse.2.1 glpk.8.0 gmp.11.1 lapack.7.1 xml2.21.0 arpack-3.8.0p2v0 cmake-3.31.2v1 dwz-0.15 glpk-5.0 gmp-6.3.0 lapack-3.12.0 libxml-2.13.5 ninja-1.11.1p0v0 suitesparse-4.4.6p3 (Junk lock released for exopi-5 at 1734705531.41) distfiles size=4439424 >>> Running patch in math/igraph at 1734705531.44 ===> math/igraph ===> Checking files for igraph-0.10.15 `/exopi-cvs/ports/distfiles/igraph-0.10.15.tar.gz' is up to date. >> (SHA256) all files: OK ===> Extracting for igraph-0.10.15 ===> Patching for igraph-0.10.15 ===> Applying OpenBSD patch patch-etc_cmake_dependencies_cmake Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Index: etc/cmake/dependencies.cmake |--- etc/cmake/dependencies.cmake.orig |+++ etc/cmake/dependencies.cmake -------------------------- Patching file etc/cmake/dependencies.cmake using Plan A... Hunk #1 succeeded at 25. Hunk #2 succeeded at 155. done ===> Compiler link: clang -> /usr/bin/clang ===> Compiler link: clang++ -> /usr/bin/clang++ ===> Compiler link: cc -> /usr/bin/cc ===> Compiler link: c++ -> /usr/bin/c++ >>> Running configure in math/igraph at 1734705532.97 ===> math/igraph ===> Generating configure for igraph-0.10.15 ===> Configuring for igraph-0.10.15 -- Version number: 0.10.15 -- The C compiler identification is Clang 16.0.6 -- The CXX compiler identification is Clang 16.0.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /exopi-obj/pobj/igraph-0.10.15/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /exopi-obj/pobj/igraph-0.10.15/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test COMPILER_SUPPORTS_UNKNOWN_WARNING_OPTION_FLAG -- Performing Test COMPILER_SUPPORTS_UNKNOWN_WARNING_OPTION_FLAG - Success -- Performing Test COMPILER_HAS_DEPRECATED_ENUMVAL_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ENUMVAL_ATTR - Success -- Thread-local storage: supported (__thread) -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/local/lib/libblas.so.2.1 -- Found GLPK: /usr/local/lib/libglpk.so.8.0 (found suitable version "5.0", minimum required is "4.57") -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/local/lib/liblapack.so.7.1;/usr/local/lib/libblas.so.2.1 -- Found ARPACK: /usr/local/lib/libarpack.so.2.0 -- Found GMP: /usr/local/lib/libgmp.so.11.1 -- Could NOT find PLFIT (missing: PLFIT_LIBRARY PLFIT_INCLUDE_DIR) (Required is at least version "0.9.3") -- Could NOT find OpenMP_C (missing: OpenMP_C_FLAGS OpenMP_C_LIB_NAMES) -- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES) -- Could NOT find OpenMP (missing: OpenMP_C_FOUND OpenMP_CXX_FOUND) -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Found LibXml2: /usr/local/lib/libxml2.so.21.0 (found suitable version "2.13.5", minimum required is "2.7.4") -- Found FLEX: /usr/bin/flex (found version "2.5.39") -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for _stricmp -- Looking for _stricmp - not found -- Looking for _strnicmp -- Looking for _strnicmp - not found -- Looking for strdup -- Looking for strdup - found -- Looking for strndup -- Looking for strndup - found -- Looking for include file xlocale.h -- Looking for include file xlocale.h - not found -- Looking for uselocale -- Looking for uselocale - found -- Looking for _configthreadlocale -- Looking for _configthreadlocale - not found -- Performing Test HAVE__UMUL128 -- Performing Test HAVE__UMUL128 - Failed -- Performing Test HAVE___UMULH -- Performing Test HAVE___UMULH - Failed -- Looking for C++ include sys/types.h -- Looking for C++ include sys/types.h - found -- Looking for C++ include stdint.h -- Looking for C++ include stdint.h - found -- Looking for C++ include stddef.h -- Looking for C++ include stddef.h - found -- Check size of __uint128_t -- Check size of __uint128_t - done -- Performing Test HAVE__POPCNT64 -- Performing Test HAVE__POPCNT64 - Failed -- Performing Test HAVE__POPCNT -- Performing Test HAVE__POPCNT - Failed -- Performing Test HAVE__BITSCANFORWARD64 -- Performing Test HAVE__BITSCANFORWARD64 - Failed -- Performing Test HAVE__BITSCANFORWARD -- Performing Test HAVE__BITSCANFORWARD - Failed -- Performing Test HAVE__BITSCANREVERSE64 -- Performing Test HAVE__BITSCANREVERSE64 - Failed -- Performing Test HAVE__BITSCANREVERSE -- Performing Test HAVE__BITSCANREVERSE - Failed -- Performing Test HAVE_BUILTIN_OVERFLOW -- Performing Test HAVE_BUILTIN_OVERFLOW - Success -- Looking for _LIBCPP_VERSION -- Looking for _LIBCPP_VERSION - found -- Looking for __GLIBCXX__ -- Looking for __GLIBCXX__ - not found -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Performing Test HAVE_ENABLE_NEW_DTAGS -- Performing Test HAVE_ENABLE_NEW_DTAGS - Success -- Disabling new dtags for testing to use RPATH to ensure the correct library is found. -- Found Python3: /usr/local/bin/python3.11 (found version "3.11.10") found components: Interpreter -- -- -----[ Build configuration ]---- -- Version: 0.10.15 -- CMake build type: Release -- Library type: shared -- igraph_integer_t size: 64 bits -- -- ----------[ Features ]---------- -- GLPK for optimization: yes -- Reading GraphML files: yes -- Thread-local storage: yes -- Link-time optimization: yes -- -- --------[ Dependencies ]-------- -- ARPACK: yes -- BLAS: yes -- FLEX: yes -- GLPK: yes -- GMP: yes -- LAPACK: yes -- LibXml2: yes -- OpenMP: no -- PLFIT: vendored -- -- -----------[ Testing ]---------- -- Diff tool: diff -- Sanitizers: none -- Code coverage: no -- Verify 'finally' stack: no -- -- --------[ Documentation ]------- -- HTML: no -- PDF: no -- INFO: no -- -- igraph configured successfully. -- -- Configuring done (26.6s) -- Generating done (2.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_ASM_COMPILER_AR CMAKE_ASM_COMPILER_RANLIB CMAKE_Fortran_COMPILER_AR CMAKE_Fortran_COMPILER_RANLIB CMAKE_OBJCXX_COMPILER_AR CMAKE_OBJCXX_COMPILER_RANLIB CMAKE_OBJC_COMPILER_AR CMAKE_OBJC_COMPILER_RANLIB -- Build files have been written to: /exopi-obj/pobj/igraph-0.10.15/build-amd64 >>> Running build in math/igraph at 1734705562.47 ===> math/igraph ===> Building for igraph-0.10.15 Change Dir: '/exopi-obj/pobj/igraph-0.10.15/build-amd64' Run Build Command(s): /usr/local/bin/ninja -v -j 1 [1/354] /exopi-obj/pobj/igraph-0.10.15/bin/cc -DIGRAPH_STATIC -DNCOMPLEX -D_POSIX_C_SOURCE=200809L -I/exopi-obj/pobj/igraph-0.10.15/igraph-0.10.15/include -I/exopi-obj/pobj/igraph-0.10.15/build-amd64/include -O2 -pipe -g -DNDEBUG -std=gnu99 -flto=thin -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -Wstrict-prototypes -Wno-unused-function -Wno-unused-parameter -Wno-unused-but-set-variable -Wno-sign-compare -Wno-constant-logical-operand -Wno-unknown-warning-option -Wno-unused-variable -MD -MT 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/usr/local/lib/liblapack.so.7.1 /usr/local/lib/libblas.so.2.1 /usr/local/lib/libxml2.so.21.0 /usr/local/lib/libglpk.so.8.0 /usr/local/lib/libgmp.so.11.1 /usr/local/lib/liblapack.so.7.1 /usr/local/lib/libxml2.so.21.0 -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [353/354] /usr/local/bin/cmake -E cmake_symlink_library src/libigraph.so.5.0 src/libigraph.so.5.0 src/libigraph.so && : [354/354] /exopi-obj/pobj/igraph-0.10.15/bin/cc -D_POSIX_C_SOURCE=200809L -I/exopi-obj/pobj/igraph-0.10.15/igraph-0.10.15/include -I/exopi-obj/pobj/igraph-0.10.15/build-amd64/include -O2 -pipe -g -DNDEBUG -std=gnu99 -flto=thin -fvisibility=hidden -Wall -Wextra -pedantic -Wstrict-prototypes -Wno-unused-function -Wno-unused-parameter -Wno-unused-but-set-variable -Wno-sign-compare -Wno-constant-logical-operand -Wno-unknown-warning-option -MD -MT tests/CMakeFiles/test_utilities.dir/unit/test_utilities.c.o -MF tests/CMakeFiles/test_utilities.dir/unit/test_utilities.c.o.d -o tests/CMakeFiles/test_utilities.dir/unit/test_utilities.c.o -c /exopi-obj/pobj/igraph-0.10.15/igraph-0.10.15/tests/unit/test_utilities.c >>> Running fake in math/igraph at 1734705816.71 ===> math/igraph ===> Faking installation for igraph-0.10.15 -- Install configuration: "Release" -- Installing: /exopi-obj/pobj/igraph-0.10.15/fake-amd64/usr/local/lib/libigraph.so.5.0 -- Set non-toolchain portion of runtime path of "/exopi-obj/pobj/igraph-0.10.15/fake-amd64/usr/local/lib/libigraph.so.5.0" to "/usr/local/lib" -- Installing: /exopi-obj/pobj/igraph-0.10.15/fake-amd64/usr/local/include/igraph -- Installing: /exopi-obj/pobj/igraph-0.10.15/fake-amd64/usr/local/include/igraph/igraph_conversion.h -- Installing: /exopi-obj/pobj/igraph-0.10.15/fake-amd64/usr/local/include/igraph/igraph_attributes.h -- Installing: /exopi-obj/pobj/igraph-0.10.15/fake-amd64/usr/local/include/igraph/igraph_coloring.h -- Installing: /exopi-obj/pobj/igraph-0.10.15/fake-amd64/usr/local/include/igraph/igraph_bitset.h -- 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archiving|****************************************************************|100% Link to /exopi-cvs/ports/packages/amd64/ftp/igraph-0.10.15.tgz Link to /exopi-cvs/ports/packages/amd64/ftp/debug-igraph-0.10.15.tgz >>> Running clean in math/igraph at 1734705826.01 ===> math/igraph ===> Cleaning for igraph-0.10.15 >>> Ended at 1734705827.09 max_stuck=118.86/depends=4.24/show-prepare-results=3.03/patch=1.53/configure=29.50/build=254.24/fake=0.86/package=8.42/clean=1.12